Sorry guys, apparently there is still confusion about what my question is! I know how I can solve my problem with Nero, CoolEditPro or EAC, just wanted to know if there is an automated tool which does the things I have to do in Nero manually, automatically! Because I think this is not an uncommon problem, I expected some tools to be available out there who can solve this problem!
BTW, I still don’t understand how I can burn ‘with limitations’! As far as I know this is not possible with the burning software I use (Nero, CloneCD, EAC, Feurio) The thread Wookie is referring to is just explaining how to create a cue-sheet (that is: set index0 and index1 just like you would do in a cue-sheet). To my knowledge you can’t physically split a file in Nero (that is: Nero, here is a wav file, burn it, but leave out the first 2 seconds and the last 2 seconds).