Out of order chapters

I´ve a problem using dvddecrypter->dvd2one(1.02)->copytodvd(2.0.0.58). Making matrix and other long movie I always get the same problem. Last two chapters of the film have gone and are relinked to the second chapter of the movie(neither freezing, nor stopping, just jumping to those first chapters). I edited the ifo (after porcessing dvd2one)and realized dvd2one had changed the order. I fixed it with ifoedit and burned with Copytodvd but the porblem arised again when I played it and when I opened the burned ifo it had wrong link for the 2 last chapters. Has someone found this porblem?

Thanks in advance