I understand now, Thanks guys. I forgot that Anydvd works in the background with Shrink running, it's been along time since I use it. Everything is work fine now. I see that I can run Anydvd with shrink or I can rip to HD first and re-author and movie only.
@coolcolors, Right clicking on the icon in the taskbar, does give the option to rip to HD. Though it still does the whole movie.