Hiding CD-R Media question

I’m one of those picky people that hate to have thing running in the background. I know with some of the new Safedisc protected games you need to use the Clone CD tray icon to hide CD-R media. I’m looking for way to burn the backups so that they don’t even look for CD-R media because I rather not have the little Clone CD thing running in the background when I go the play the game.