?? "Clone DVD copies" -everything-.
"Copy DVD Titles" just copies what you select, and you can just select the movie and drop the ads and the menu stays in tact.
Some titles put warnings, MPAA ratings, etc at the front of the main menu instead of as separate files though so Clone DVD brings them with the menu.
If you remove subtitles, languages, etc. CloneDVD2 links that menu selection back to whatever you left (i.e. selecting Spanish language when you've removed it doesn't hang the player, it just links you to the English), so menu buttons aren't a big deal though it would be nice to make it so you can't even select them.
The warnings and other garbage at the front of the menu would be nice to remove though, and just playing tonight I was able to do that using pgcedit.