1st thing slysoft is not the company that made clonedvd2 Elby did but anydvd has been made fully compatable with clonedvd2.
2nd Did you configure anydvd correctly, is all the boxes ticked in the feature removal section. Have you selected the correct region that you are in? Also have you ever had dvd43 on your pc as that will cause major conflicts with anydvd. Another thing is make sure in the navigation you have remove annoying adverts and trailers off, as it does not work with all movies.
I have had anydvd for a very long time and have never had a problem with it. I have used it with Shrink,Recode2,1click pro,dvd decrypter.
Maybe I'm just lucky
EDIT: dvdshrink is no longer supported/updated as the man who made shrink now works for nero. As you like shrink you might like Nero recode 2 as it is developed by the same man.
EDIT: I have just finished some tests regarding transcoders I have clonedvd2,Shrink,1Click dvd copy pro,and Nero recode 2 and the clear winner for me was Nero recode 2
1st recode 2
3rd 1click pro
4th clonedvd2 (very disapointing)