A nerversion of ClonyXXL has been released.
Below is a badly translater change log.
SD2.9 recognition of little mistakes in Def.
Sectors recognition removed.
Many new distance tax functions (for Addons).
More exact progresses indicated.
Many littler improvements.
You can find it here.
Also the same person is working on a multi profiler that will input the settings needed to copy your CD to CloneCD, BlindWrite GameJack, Alcohol and something called Andere all from the same program.
This hasn't been relaesed yet but there is a screen shot of it on the same page.