CloneDVD issue - 2nd dvd of split movie has pauses between chapters



I am using CloneDVD2.1 and am having an issue with the 2nd disc of any DVD that I split into 2.

The dvd has to be manually pushed from 1 chapter to the next which sucks when there is music and 50 chapters ;(

I noticed it afterthefact of course when backing up my 7 dvd series of the Blues.

I thought the idea of CloneDVD breaking them nicely in 2 was great, has anyone had an issue similar to this? And is there a simple fix?

I know, newbie questions, RTFM, all that jazz…