Most movies that can be downloaded on the torrents are not legal, and therefore off limits for us to discuss here. We try to give members the benefit of a doubt on such things however, so lets assume you have a legal one for the moment.
Most movies on torrents are contained in one file, usually in avi format. I'm not sure what you have, unless you are talking about the Video_TS and Audio_TS folders seen in dvd-video.
CloneDVD should be able to handle dvd-video unless the download was corrupted. Does the movie play correctly on your computer or from the disk you burned?
I'm afraid we won't be able to help much without knowing more about the file. And if the file is an illegal one, that will cause this thread to be shut down. So, we are at something of an impasse.