I have the exact same problem still. Sometimes it will even start back at the beginning of the DVD without going to the next VOB (this doesnt happen all the time but it happens. Otherwise it stalls out for like 30 seconds before playing the next VOB and since there are a lot of VOB's it is horrible. Do you think that it is a VOBEdit problem with the join clips option or a problem with IFOEdit?
Try it yourself if your interested. But make sure you test on a real set top DVD player like my sony SLV-D300P which can play DVD+-R +_RW DVD discs & VCD's.
Here is what I am doing... Cropping out various sections from different DVD's making sure they all use the same audio usually AC3 2 Channel. Then renaming the VOB files to VTS_01_001.VOB, VTS_01_002.VOB etc. Then I join clips with VOBEDIT into a new folder without any IFO's etc. Then I use IFOEDIT to create new IFO's then without closing "like you said to try" I would hit the get VTS sectors and following that burn it to dvd with clone dvd. I have also now burned it to DVD with Nero and I have the exact same problem so it isnt the burning software. I have just tested a DVD+R since I was using a DVD+RW for my test disc so I wouldnt waste any discs and I just wasted one since it didnt make any difference. I would be a very happy person if I could get this to work. Oh, and I am using all the current version of the software I mentioned accept cloneDVD which changes too often. thanks for the help